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2019
Halouani, G. et al. An end-to-end model to evaluate the sensitivity of ecosystem indicators to track fishing impacts. Ecological Indicators 98, 121 - 130 (2019).
2018
Maar, M. et al. Responses of summer phytoplankton biomass to changes in top-down forcing: Insights from comparative modelling. Ecological Modelling 376, (2018).
Fu, C. et al. Risky business: The combined effects of fishing and changes in primary productivity on fish communities. Ecological Modelling 368, 265-276 (2018).
Shin, Y. - J. et al. The specificity of marine ecological indicators to fishing in the face of environmental change: A multi-model evaluation. Ecological Indicators 89, 317-326 (2018).
2017
Xing, L. et al. An individual-based model for simulating the ecosystem dynamics of Jiaozhou Bay, China. Ecological Modelling 360, 120-131 (2017).
Tittensor, D. et al. A protocol for the intercomparison of marine fishery and ecosystem models: Fish-MIP v1.0. Geoscientific Model Development Discussions 1-39 (2017).
Oliveros-Ramos, R. , Verley, P. , Echevin, V. & Shin, Y. - J. . A sequential approach to calibrate ecosystem models with multiple time series data. Progress In Oceanography 151, 227-244 (2017).
Fu, C. et al. Spatial and temporal dynamics of predator-prey species interactions off western Canada. ICES Journal of Marine Science 74, 2107-2119 (2017).
Fu, C. et al. Spatial and temporal dynamics of predator-prey species interactions off western Canada. ICES Journal of Marine Science (2017).
2016
Grüss, A. et al. Estimating natural mortality rates and simulating fishing scenarios for Gulf of Mexico red grouper (Epinephelus morio) using the ecosystem model OSMOSE-WFS. Journal of Marine Systems 154, Part B, 264 - 279 (2016).
Grüss, A. et al. Management strategy evaluation using the individual-based,multispecies modeling approach OSMOSE. Ecological Modelling 340, 86–105 (2016).
Halouani, G. et al. Modelling food web structure using an end-to-end approach in the coastal ecosystem of the Gulf of Gabes (Tunisia). Ecological Modelling 339, 45-57 (2016).
2015
Smith, M. D. , Fulton, E. A. , Day, R. W. , Shannon, L. J. & Shin, Y. - J. . Ecosystem modelling in the southern Benguela: comparisons of Atlantis, Ecopath with Ecosim, and OSMOSE under fishing scenarios. African Journal of Marine Science 37, 65-78 (2015).
Grüss, A. et al. Evaluation of the trophic structure of the West Florida Shelf in the 2000s using the ecosystem model OSMOSE. Journal of Marine Systems 144, 30 - 47 (2015).
2014
Travers-Trolet, M. , Shin, Y. - J. , Shannon, L. J. , Moloney, C. L. & Field, J. G. . Combined Fishing and Climate Forcing in the Southern Benguela Upwelling Ecosystem: An End-to-End Modelling Approach Reveals Dampened Effects. {PLoS} {ONE} 9, e94286 (2014).
Travers-Trolet, M. , Shin, Y. - J. & Field, J. G. . An end-to-end coupled model {ROMS}-N2P2Z2D2-{OSMOSE} of the southern Benguela foodweb: parameterisation, calibration and pattern-oriented validation. African Journal of Marine Science 36, 11–29 (2014).
Oliveros-Ramos, R. . End–to–end modelling for an ecosystem approach to fisheries in the Northern Humboldt Current Ecosystem. (2014).
2013
Fu, C. , R. Perry, I. , Shin, Y. - J. , Schweigert, J. & Liu, H. . An ecosystem modelling framework for incorporating climate regime shifts into fisheries management. Progress in Oceanography 115, 53–64 (2013).
Brochier, T. , Ecoutin, J. Marc, de Morais, L. Tito, Kaplan, D. M. & Lae, R. . A multi-agent ecosystem model for studying changes in a tropical estuarine fish assemblage within a marine protected area. Aquatic Living Resources 26, 147–158 (2013).
Fu, C. , Perry, R. , Shin, Y. - J. , Schweigert, J. & Liu, H. Z. . Strait of Georgia Ecosystem Research Initiative (ERI). (2013).
2012
Fu, C. , Shin, Y. - J. , Perry, R. , King, J. & Liu, H. . Exploring climate and fishing impacts in an ecosystem framework. Global Progress in Ecosystem-based Fisheries Management 65-85 (2012).
Fu, C. , Shin, Y. J. , Perry, R. I. , King, J. & Liu, H. . Global Progress in Ecosystem-Based Fisheries Management 65–86 (Alaska Sea Grant, University of Alaska Fairbanks, 2012). at <http://seagrant.uaf.edu/bookstore/pubs/item.php?id=11932>
Gasche, L. , Gascuel, D. , Shannon, L. & Shin, Y. - J. . Global assessment of the fishing impacts on the Southern Benguela ecosystem using an {EcoTroph} modelling approach. Journal of Marine Systems 90, 1–12 (2012).
2011
Smith, A. D. M. et al. Impacts of Fishing Low–Trophic Level Species on Marine Ecosystems. Science 333, 1147–1150 (2011).
2010
Duboz, R. , Versmisse, D. , Travers, M. , Ramat, E. & Shin, Y. - J. . Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model. Ecological Modelling 221, 840–849 (2010).

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